SNP Profiles matching LP 4/20 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	AG	GG	AA	CC
1._RUQ_1628	TT	CC	CC	TT	CC	GG	AC	CG	AG	TT	AG	GG	AA	CC
2._RUQ_1599	TT	CC	CC	TT	CC	GG	AC	CG	AG	TT	AG	GG	AA	CC
3._IMC_2	_	_	AC	GT	CT	_	AC	_	_	CT	_	_	AA	_
4._RUQ_1617	TT	CC	AC	TT	CC	GG	AC	GG	AG	CT	AG	GG	AA	CC
5._RUQ_1590	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	GG	GG	AA	CC
6._RUQ_11	TT	CC	CC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC
7._RUQ_1633	TT	CC	CC	GT	CT	GG	AC	CC	AG	TT	AG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
1._RUQ_1628	AA	CC	CT	GT	GG	AA	CT	CC	TT	GG	GG	TT	AA	CC
2._RUQ_1599	AA	CC	CT	GT	GG	AA	CT	CC	TT	GG	GG	TT	AA	CC
3._IMC_2	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
4._RUQ_1617	AA	CC	CT	GG	CG	AA	CT	CC	TT	GG	GG	TT	AC	CC
5._RUQ_1590	AA	AC	CC	GT	CG	AC	CT	CC	TT	GG	GG	TT	AC	CC
6._RUQ_11	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
7._RUQ_1633	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG	AG
1._RUQ_1628	CC	TT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG	AG
2._RUQ_1599	CC	-	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG	AG
3._IMC_2	_	TT	AA	_	CC	_	_	_	GG	_	_	TT	CG	AG
4._RUQ_1617	CC	TT	AA	CC	CT	GG	GG	TT	GG	CT	CC	TT	CG	AG
5._RUQ_1590	CC	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	TT	GG	AG
6._RUQ_11	CC	TT	AA	CC	CT	GG	GG	TT	TT	CT	CC	TT	CG	AG
7._RUQ_1633	CC	TT	AA	CC	CT	GG	GG	TT	TT	CT	CC	TT	CG	AG

Input profile: LP_4_/20_[POU] RUQ_1676

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_38 RUQ_1628

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EBC_148 RUQ_1599

93.9 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._IMC_2

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

4._IMC_60 RUQ_1617

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._IMC_50 RUQ_1590

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._IMC_54 RUQ_11

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._IMC_58 RUQ_1633

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching LP 4/20 [POU]

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Input profile: LP_4_/20_[POU] RUQ_1676

1._IMC_38 RUQ_1628

94 % 42 shared markers

2._EBC_148 RUQ_1599

93.9 % 41 shared markers

3._IMC_2

93.2 % 22 shared markers

4._IMC_60 RUQ_1617

91.7 % 42 shared markers

5._IMC_50 RUQ_1590

90.5 % 42 shared markers

6._IMC_54 RUQ_11

90.5 % 42 shared markers

7._IMC_58 RUQ_1633

90.5 % 42 shared markers

94 %
42 shared markers

93.9 %
41 shared markers

93.2 %
22 shared markers

91.7 %
42 shared markers

90.5 %
42 shared markers

90.5 %
42 shared markers

90.5 %
42 shared markers